PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028248
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 356aa    MW: 39386.2 Da    PI: 7.238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028248genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl
      Lus10028248 14 KGPWSPEEDAKLKSYIDQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding383.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd l+  +    G++ W+ Ia+ ++ gRt++++k++w++
      Lus10028248  69 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.439962IPR017930Myb domain
SuperFamilySSF466893.43E-2611109IPR009057Homeodomain-like
SMARTSM007173.7E-121364IPR001005SANT/Myb domain
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-251569IPR009057Homeodomain-like
CDDcd001672.30E-91662No hitNo description
PROSITE profilePS5129421.75263117IPR017930Myb domain
SMARTSM007174.5E-1167115IPR001005SANT/Myb domain
PfamPF002496.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2370117IPR009057Homeodomain-like
CDDcd001671.90E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYID QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLRKKLLGK  120
QHRKVHRKPT PTTTSAGGGS IKGRSEAAAP PADHCNDQLI NGLVIPNTTS SYRPPIPYSN  180
EESRLNEQAA IRKLLLNLGG RFSSDDIHTS HSRSHSSSAS MEGTEVVLQT IQAVDHHNDH  240
HLEYCNNSLE VGGGSSSLDA GLEFLLSSGD PQEMMMVMSS TDEDHHQVPK NNITIDVDHH  300
TNFVSLAEGL LMTTSHHHHK EDHQYYGFDA ATAAGVDQMM MMMMHPYQEG AARSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301137.22e-99hypothetical protein POPTR_0002s11440g
TrEMBLB9GNK52e-99B9GNK5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11440.16e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-83myb domain protein 84